STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixCDigeranylgeranylglycerophospholipid reductase 2; Dehydrogenases (flavoproteins). (392 aa)    
Predicted Functional Partners:
fixA
Protein fixA; Electron transfer flavoprotein, beta subunit.
  
 
 0.597
ybjJ
Inner membrane protein ybjJ; Permeases of the major facilitator superfamily.
       0.572
ACPL_8041
Predicted naringenin-chalcone synthase.
  
  
 0.544
ACPL_7394
Protein fixB; Electron transfer flavoprotein, alpha subunit.
  
 
 0.522
chlI-2
Mg-chelatase subunit ChlI.
 
  
 0.509
ACPL_461
Hypothetical protein; Predicted transmembrane transcriptional regulator (anti-sigma factor).
   
  
 0.508
ACPL_7053
Hypothetical protein; Predicted transmembrane transcriptional regulator (anti-sigma factor).
   
  
 0.508
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.438
crtI-3
Phytoene/squalene synthetase.
 
  
 0.422
cobN
Cobalamin biosynthesis protein CobN and related Mg-chelatases.
  
  
 0.403
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.