Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
capDPolysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases. (370 aa)    
Predicted Functional Partners:
epsN
DegT/DnrJ/EryC1/StrS aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.852
yvfE
DegT/DnrJ/EryC1/StrS aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.847
ACPL_5154
N-acetylglucosaminyltransferase; Glycosyltransferases, probably involved in cell wall biogenesis.
     
 0.791
wzc-2
Receptor protein-tyrosine kinase; ATPases involved in chromosome partitioning.
 
  
 0.738
ACPL_914
Lipopolysaccharide biosynthesis protein; ATPases involved in chromosome partitioning.
 
  
 0.737
wzc
Non-specific protein-tyrosine kinase; ATPases involved in chromosome partitioning.
 
  
 0.720
cysE-2
Acetyltransferase; Isoleucine patch superfamily.
 
   
 0.702
wcaJ
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.699
stsC
Glutamine-scyllo-inositol transaminase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.659
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes.
  
 
 0.646
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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