STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcmR-5Transcriptional regulator. (192 aa)    
Predicted Functional Partners:
tcmR-2
Transcriptional regulator.
  
     0.736
ACPL_2193
HTH-type transcriptional repressor acnR; Transcriptional regulator.
  
     0.730
tcmR-7
Transcriptional regulator.
  
     0.693
tcmR-3
Transcriptional regulator.
  
     0.635
tcmR-6
Transcriptional regulator.
  
     0.576
ACPL_4228
yvdT-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator.
  
     0.535
ACPL_4579
Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases.
  
     0.431
ACPL_5197
Beta-lactamase domain protein; Zn-dependent hydrolases, including glyoxylases.
       0.431
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.