Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACPL_5203yuxH-like uncharacterized protein; Predicted signal transduction protein containing EAL and modified HD-GYP domains. (400 aa)    
Predicted Functional Partners:
ACPL_5204
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.522
ACPL_7920
Flagellar motor switch/type III secretory pathway protein.
 
     0.522
pclO-2
Protein piccolo; Type V secretory pathway, adhesin AidA.
 
     0.519
ACPL_7924
Chemotaxis protein motA; Flagellar motor component.
 
     0.511
ACPL_5202
Hypothetical protein; Protocatechuate 3,4-dioxygenase beta subunit.
       0.500
ACPL_315
Phytochrome-like protein cph2; FOG: EAL domain.
 
   
 0.496
ACPL_3661
Phytochrome-like protein cph2; FOG: EAL domain.
 
   
 0.488
ACPL_4300
DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.
 
     0.469
ACPL_2719
Phytochrome-like protein cph2; FOG: EAL domain.
 
   
 0.433
ACPL_6665
DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.
 
     0.418
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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