Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_5261Transcriptional regulators. (263 aa)    
Predicted Functional Partners:
nadR
Transcriptional regulator nadR; FAD synthase.
   
    0.803
ACPL_7758
Mini-circle putative transposase for IS117.
  
     0.675
ACPL_7555
Uxu operon regulator; Transcriptional regulators.
  
  
 0.638
ACPL_1364
Collagen alpha-4(VI) chain; Superfamily II DNA and RNA helicases.
  
   
 0.585
ACPL_8300
Hypothetical protein.
  
     0.580
ACPL_977
Myosin-XV.
  
   
 0.574
ACPL_197
Hypothetical protein.
  
     0.573
ACPL_3701
HTH-type transcriptional activator rhaS; AraC-type DNA-binding domain-containing proteins.
  
  
 0.566
yvoA
Mannosyl-D-glycerate transport/metabolism system repressor mngR; Transcriptional regulators.
  
     0.549
ACPL_720
Protein Daple; Type V secretory pathway, adhesin AidA.
  
     0.547
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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