STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_5436Putative amidohydrolase ytcJ; Predicted metal-dependent hydrolase with the TIM-barrel fold. (545 aa)    
Predicted Functional Partners:
ACPL_5435
Hypothetical protein.
       0.746
ACPL_2797
ytzA-like uncharacterized protein; Protein affecting phage T7 exclusion by the F plasmid.
  
    0.670
dpm-2
Dolichol-phosphate mannosyltransferase; Glycosyltransferases involved in cell wall biogenesis.
  
    0.621
ACPL_2383
Hypothetical protein; Predicted enzyme of the cupin superfamily.
 
     0.567
ACPL_5434
HTH-type protein slmA; Transcriptional regulator.
       0.517
ACPL_5433
Putative membrane protein mmpL3; Predicted drug exporters of the RND superfamily.
       0.486
ACPL_596
Kynurenine formamidase; Predicted metal-dependent hydrolase.
 
   
 0.427
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.