Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araDRibulose-5-phosphate 4-epimerase and related epimerases and aldolases. (238 aa)    
Predicted Functional Partners:
xylB-2
Xylulokinase; Glycerol kinase.
  
 
 0.942
xylB
Xylulokinase; Glycerol kinase.
  
 
 0.939
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.915
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.888
araA-2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.888
ACPL_4770
Glycerol kinase; Sugar (pentulose and hexulose) kinases.
 
  
 0.839
ACPL_5519
alpha-N-arabinofuranosidase; Predicted beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.717
ACPL_3660
Glycoside hydrolase family protein; Predicted beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.645
metH
5-methyltetrahydrofolate-homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.555
ACPL_3400
Hypothetical protein.
  
 0.479
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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