STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choDCholesterol oxidase; Choline dehydrogenase and related flavoproteins. (558 aa)    
Predicted Functional Partners:
choD-2
Cholesterol oxidase; Choline dehydrogenase and related flavoproteins.
  
  
 
0.902
qcrC
Cytochrome c, mono- and diheme variants.
  
 
 0.880
ACPL_5524
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; Predicted flavoprotein involved in K+ transport.
 
  
 0.830
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
     
 0.636
paaK
Phenylacetic acid degradation NADH oxidoreductase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
 0.574
ACPL_5526
Abhydrolase domain-containing protein 6; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
     
 0.548
ACPL_3400
Hypothetical protein.
   
 0.513
ACPL_5775
Hypothetical protein.
   
 0.513
ACPL_3611
Ankyrin-1; FOG: Ankyrin repeat.
    
 0.486
ank2
Ankyrin-2; FOG: Ankyrin repeat.
    
 0.486
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.