STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_5539Regulator of nonsense transcripts 1; Superfamily I DNA and RNA helicases and helicase subunits. (1612 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase domain 2.
  
    0.670
ACPL_8011
Hypothetical protein.
  
    0.662
ACPL_3454
Hypothetical protein.
  
    0.621
ACPL_6563
Hypothetical protein.
  
    0.621
capD-2
Polysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases.
       0.620
ACPL_5542
O-antigen polymerase.
 
     0.563
iolB
5-deoxy-glucuronate isomerase; Uncharacterized enzyme involved in inositol metabolism.
   
    0.525
ACPL_7625
Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
  
 
 0.508
ACPL_7626
Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
  
 
 0.508
ponA
Glycosyl transferase family protein; Membrane carboxypeptidase (penicillin-binding protein).
       0.503
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.