STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_5601Signaling protein ykoW; Predicted signal transduction protein containing sensor and EAL domains. (396 aa)    
Predicted Functional Partners:
barA
Sensory box histidine kinase/response regulator; Signal transduction histidine kinase.
  
 
 0.884
ACPL_2318
Signal transduction histidine kinase.
  
 
 0.871
ACPL_4809
Two-component system sensor protein; Signal transduction histidine kinase.
  
 
 0.863
ACPL_5578
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); FOG: GGDEF domain.
 
 
 0.852
ACPL_7022
y4lL-like uncharacterized protein; FOG: GGDEF domain.
 
 
 0.840
etr2-2
Ethylene receptor 2; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 0.819
ACPL_3614
Putative signaling protein; FOG: GGDEF domain.
 
 
 0.819
ACPL_2604
Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.817
ACPL_398
GAF sensor hybrid histidine kinase; FOG: HAMP domain.
  
 
 0.809
ACPL_4152
yegE-like uncharacterized protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 
 0.803
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.