STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDRibose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily. (514 aa)    
Predicted Functional Partners:
ACPL_5611
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.971
ACPL_5610
Putative D,D-dipeptide transport system permease protein ddpB; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.965
dppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.922
appC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.904
oppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.879
ACPL_5612
Peptide/nickel transport system substrate-binding protein; ABC-type dipeptide transport system, periplasmic component.
 
  
 0.875
ACPL_2953
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.863
ACPL_6678
Methionine import ATP-binding protein metN; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
  
0.863
dppC-2
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.851
dppB
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.849
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.