STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsNDegT/DnrJ/EryC1/StrS aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (377 aa)    
Predicted Functional Partners:
ACPL_3122
Bifunctional protein glmU; Acetyltransferase (isoleucine patch superfamily).
 
  
 0.903
ACPL_5638
Glycosyltransferase.
 
    0.855
capD
Polysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases.
 
  
 0.846
wzc-2
Receptor protein-tyrosine kinase; ATPases involved in chromosome partitioning.
  
  
 0.841
capD-3
Polysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases.
 
  
 0.841
capD-2
Polysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases.
 
  
 0.835
ACPL_5643
Hypothetical protein.
 
     0.806
ndhD
NAD(P)H-quinone oxidoreductase chain 4; Similar to chloroplast protein; Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.799
ACPL_5636
Putative polysaccharide deacetylase yxkH; Predicted xylanase/chitin deacetylase.
  
    0.793
ACPL_3099
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.770
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.