STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_5641Putative lipopolysaccharide biosynthesis protein; Lipid A core - O-antigen ligase and related enzymes. (403 aa)    
Predicted Functional Partners:
ndhD
NAD(P)H-quinone oxidoreductase chain 4; Similar to chloroplast protein; Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.966
ACPL_5635
Aminoacyltransferase femX; Uncharacterized protein involved in methicillin resistance.
 
     0.857
ACPL_5643
Hypothetical protein.
 
     0.857
ACPL_5636
Putative polysaccharide deacetylase yxkH; Predicted xylanase/chitin deacetylase.
 
   
 0.834
wzc-2
Receptor protein-tyrosine kinase; ATPases involved in chromosome partitioning.
  
  
 0.828
ACPL_3129
Hypothetical protein.
 
    0.795
ACPL_5638
Glycosyltransferase.
 
  
 0.792
ACPL_5644
Kynurenine 3-monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
     0.784
ACPL_5642
Hypothetical protein.
       0.782
ACPL_7314
Histone-lysine N-methyltransferase MLL3.
  
     0.771
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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