STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_5648Putative WD repeat-containing protein; FOG: WD40 repeat. (319 aa)    
Predicted Functional Partners:
ACPL_8258
Hypothetical protein.
  
     0.691
ACPL_3483
Tetratricopeptide repeat protein 28; FOG: TPR repeat.
 
 
  0.658
ACPL_5067
TPR repeat-containing protein; FOG: TPR repeat.
  
 
  0.617
ACPL_4120
peptidyl-Lys metalloendopeptidase.
  
     0.596
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 
  0.569
ACPL_5267
Hypothetical protein.
    
 0.555
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.540
ACPL_2628
Dyp-type peroxidase family protein; Predicted iron-dependent peroxidase.
  
     0.538
ACPL_5840
Nephrocystin-3; FOG: TPR repeat.
  
 
  0.523
ACPL_2538
Kinesin light chain; FOG: TPR repeat.
  
 
  0.518
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.