STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capD-3Polysaccharide biosynthesis protein CapD; Predicted nucleoside-diphosphate sugar epimerases. (650 aa)    
Predicted Functional Partners:
epsN
DegT/DnrJ/EryC1/StrS aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.841
yvfE
DegT/DnrJ/EryC1/StrS aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.836
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.835
ACPL_5655
Hypothetical protein.
 
  
 0.824
ACPL_914
Lipopolysaccharide biosynthesis protein; ATPases involved in chromosome partitioning.
 
  
 0.778
wbpA
Nucleotide sugar dehydrogenase; UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.775
wzc-2
Receptor protein-tyrosine kinase; ATPases involved in chromosome partitioning.
 
  
 0.768
wzc
Non-specific protein-tyrosine kinase; ATPases involved in chromosome partitioning.
 
  
 0.747
wcaJ
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.707
cysE-2
Acetyltransferase; Isoleucine patch superfamily.
 
     0.702
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.