STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_6343WD-40 repeat protein. (613 aa)    
Predicted Functional Partners:
ACPL_5563
Sphingomyelin phosphodiesterase 2.
  
     0.598
ACPL_8205
Hypothetical protein.
  
 
 0.579
ACPL_6342
ydbC-like uncharacterized protein.
       0.570
ACPL_6344
Uncharacterized protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
   0.567
ACPL_5267
Hypothetical protein.
    
 0.555
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.540
ank2
Ankyrin-2; FOG: Ankyrin repeat.
  
 
 0.503
ACPL_5449
Hypothetical protein; Zn-dependent hydrolases, including glyoxylases.
 
 
   0.503
acuC
Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
    
 0.484
ACPL_3582
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.471
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.