STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDF79857.1Conserved hypothetical protein (DUF4038). (552 aa)    
Predicted Functional Partners:
CDF79853.1
SusD-like protein.
  
 
   0.836
CDF79870.1
SusD-like protein.
  
 
   0.778
CDF79828.1
Glycoside hydrolase (GHnc).
  
     0.773
CDF79808.1
Conserved hypothetical protein.
  
     0.754
CDF79835.1
Glycoside hydrolase (GH117).
  
  
  0.739
CDF79846.1
Glycoside hydrolase (GH117).
  
  
  0.735
CDF79804.1
Beta-agarase.
  
  
  0.733
CDF79844.1
Beta-porphyranase B (GH16).
  
  
  0.732
CDF79824.1
Glycoside hydrolase (GH117); Belongs to the glycosyl hydrolase 43 family.
  
  
  0.727
CDF79860.1
Beta-agarase D (GH16).
  
  
  0.727
Your Current Organism:
Formosa agariphila
NCBI taxonomy Id: 1347342
Other names: Bacteroidetes bacterium KMM 3901, F. agariphila KMM 3901, Formosa agariphila KMM 3901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.