Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77591.1Exopolysaccharide production protein. (442 aa)    
Predicted Functional Partners:
EPR77592.1
Glutaryl-CoA dehydrogenase.
       0.783
EPR77590.1
Exopolysaccharide production protein.
 
    
0.780
EPR76439.1
Hypothetical protein.
  
     0.759
EPR77600.1
Hypothetical protein.
  
     0.758
EPR76893.1
Hypothetical protein.
  
     0.754
EPR75077.1
Hypothetical protein.
  
     0.728
EPR75097.1
Hypothetical protein.
  
     0.728
EPR76379.1
Putative DNA-binding protein.
  
     0.720
EPR75542.1
Hypothetical protein.
  
     0.713
EPR77594.1
Polysaccharide biosynthesis protein.
 
 
  0.699
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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