Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77612.1Lipoprotein LpqB. (552 aa)    
Predicted Functional Partners:
EPR77611.1
Sensor histidine kinase MtrB.
 
  
 0.952
EPR77610.1
DNA-binding response regulator MtrA.
     
 0.762
EPR75097.1
Hypothetical protein.
  
     0.732
EPR75716.1
Hypothetical protein.
  
     0.700
EPR77609.1
Integral membrane protein.
 
     0.691
EPR76968.1
Hypothetical protein.
  
     0.688
EPR76978.1
Mucin-like protein 1 precursor.
  
     0.680
EPR77594.1
Polysaccharide biosynthesis protein.
  
     0.679
EPR77607.1
Putative secreted protein.
 
     0.677
EPR76043.1
Hypothetical protein.
  
     0.677
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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