Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77618.1Hypothetical protein. (199 aa)    
Predicted Functional Partners:
EPR77617.1
Hypothetical protein.
 
     0.857
EPR77620.1
Hypothetical protein.
 
     0.777
EPR77621.1
Flagellar synthesis regulator FleN.
  
     0.773
EPR75822.1
Putative membrane/secreted protein.
  
     0.772
EPR75817.1
Flp pilus assembly protein TadB.
  
     0.767
EPR75784.1
Hypothetical protein.
  
     0.765
EPR75821.1
Hypothetical protein.
  
     0.765
EPR75823.1
Hypothetical protein.
  
     0.763
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
  
     0.760
EPR77619.1
Excisionase.
  
     0.744
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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