EPR77628.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EPR77628.1

NADH dehydrogenase subunit 5. (504 aa)

Predicted Functional Partners:

EPR75876.1

0.975

EPR75012.1

0.973

EPR77627.1

0.957

EPR75877.1

0.954

EPR75878.1

0.934

EPR75873.1

0.922

EPR75875.1

0.915

EPR75238.1

0.883

EPR75874.1

0.870

EPR77626.1

0.839

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR75012.1	EPR75238.1	ADILRU_2686	ADILRU_2379	Sarcosine oxidase, subunit alpha.	NADH dehydrogenase.	0.401
EPR75012.1	EPR75878.1	ADILRU_2686	ADILRU_1838	Sarcosine oxidase, subunit alpha.	Na(+) H(+) antiporter subunit B.	0.973
EPR75012.1	EPR77628.1	ADILRU_2686	ADILRU_0045	Sarcosine oxidase, subunit alpha.	NADH dehydrogenase subunit 5.	0.973
EPR75238.1	EPR75012.1	ADILRU_2379	ADILRU_2686	NADH dehydrogenase.	Sarcosine oxidase, subunit alpha.	0.401
EPR75238.1	EPR75876.1	ADILRU_2379	ADILRU_1836	NADH dehydrogenase.	Na(+) H(+) antiporter subunit D.	0.504
EPR75238.1	EPR75878.1	ADILRU_2379	ADILRU_1838	NADH dehydrogenase.	Na(+) H(+) antiporter subunit B.	0.454
EPR75238.1	EPR77628.1	ADILRU_2379	ADILRU_0045	NADH dehydrogenase.	NADH dehydrogenase subunit 5.	0.883
EPR75873.1	EPR75874.1	ADILRU_1833	ADILRU_1834	Na(+) H(+) antiporter subunit G.	Na(+) H(+) antiporter subunit F.	0.998
EPR75873.1	EPR75875.1	ADILRU_1833	ADILRU_1835	Na(+) H(+) antiporter subunit G.	Na(+) H(+) antiporter subunit E.	0.999
EPR75873.1	EPR75876.1	ADILRU_1833	ADILRU_1836	Na(+) H(+) antiporter subunit G.	Na(+) H(+) antiporter subunit D.	0.999
EPR75873.1	EPR75877.1	ADILRU_1833	ADILRU_1837	Na(+) H(+) antiporter subunit G.	Na(+) H(+) antiporter subunit C.	0.998
EPR75873.1	EPR75878.1	ADILRU_1833	ADILRU_1838	Na(+) H(+) antiporter subunit G.	Na(+) H(+) antiporter subunit B.	0.999
EPR75873.1	EPR77628.1	ADILRU_1833	ADILRU_0045	Na(+) H(+) antiporter subunit G.	NADH dehydrogenase subunit 5.	0.922
EPR75874.1	EPR75873.1	ADILRU_1834	ADILRU_1833	Na(+) H(+) antiporter subunit F.	Na(+) H(+) antiporter subunit G.	0.998
EPR75874.1	EPR75875.1	ADILRU_1834	ADILRU_1835	Na(+) H(+) antiporter subunit F.	Na(+) H(+) antiporter subunit E.	0.999
EPR75874.1	EPR75876.1	ADILRU_1834	ADILRU_1836	Na(+) H(+) antiporter subunit F.	Na(+) H(+) antiporter subunit D.	0.998
EPR75874.1	EPR75877.1	ADILRU_1834	ADILRU_1837	Na(+) H(+) antiporter subunit F.	Na(+) H(+) antiporter subunit C.	0.998
EPR75874.1	EPR75878.1	ADILRU_1834	ADILRU_1838	Na(+) H(+) antiporter subunit F.	Na(+) H(+) antiporter subunit B.	0.999
EPR75874.1	EPR77628.1	ADILRU_1834	ADILRU_0045	Na(+) H(+) antiporter subunit F.	NADH dehydrogenase subunit 5.	0.870
EPR75875.1	EPR75873.1	ADILRU_1835	ADILRU_1833	Na(+) H(+) antiporter subunit E.	Na(+) H(+) antiporter subunit G.	0.999