Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77426.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
EPR77427.1
Hypothetical protein.
       0.817
EPR75226.1
Hypothetical protein.
  
     0.742
EPR76851.1
Hypothetical protein.
  
     0.734
EPR76372.1
Hypothetical protein.
  
     0.730
EPR75131.1
Hypothetical protein.
  
     0.723
EPR74994.1
Membrane protein.
  
     0.693
EPR76408.1
Hypothetical protein.
  
     0.677
EPR77465.1
Very large tegument protein.
  
     0.650
EPR76043.1
Hypothetical protein.
  
     0.624
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.623
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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