Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77437.1Penicillin-binding protein. (336 aa)    
Predicted Functional Partners:
EPR77436.1
FAD dependent oxidoreductase.
       0.689
EPR76317.1
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; TCDB 3.A.1.1.3; Belongs to the ABC transporter superfamily.
     
  0.606
EPR75122.1
Zinc ABC transporter, ATP-binding protein ZnuC.
     
  0.606
EPR76897.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
  
  
  0.605
EPR76746.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.602
EPR75636.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.602
EPR75543.1
Cell division protein FtsI.
     
 0.584
EPR75068.1
Cell division protein FtsI.
     
 0.584
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.572
EPR77438.1
Protein yceI precursor; Belongs to the UPF0312 family.
       0.554
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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