Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77455.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
EPR76887.1
Hypothetical protein.
  
     0.702
EPR76734.1
Putative transcriptional regulator.
  
     0.639
EPR77590.1
Exopolysaccharide production protein.
  
     0.615
EPR77454.1
Chorismate mutase I.
       0.610
EPR77600.1
Hypothetical protein.
  
     0.586
EPR76037.1
Hypothetical protein.
  
     0.569
EPR77456.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
     0.568
EPR76885.1
Multi-domain regulatory protein.
  
     0.549
EPR77168.1
Hypothetical protein.
  
     0.534
EPR77575.1
Hypothetical protein.
  
     0.523
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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