EPR77495.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPR77495.1

Short-chain dehydrogenase/reductase SDR. (250 aa)

Predicted Functional Partners:

EPR74999.1

0.828

EPR76569.1

0.797

EPR77496.1

0.746

acpP

0.741

EPR76087.1

0.715

EPR77078.1

0.648

EPR76129.1

0.635

EPR76132.1

0.626

EPR75057.1

0.626

EPR75146.1

0.621

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR74999.1	EPR75146.1	ADILRU_2717	ADILRU_2496	Glutamate synthase [NADPH] large chain.	Putative sulfatase.	0.413
EPR74999.1	EPR76087.1	ADILRU_2717	ADILRU_1604	Glutamate synthase [NADPH] large chain.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	0.586
EPR74999.1	EPR76569.1	ADILRU_2717	ADILRU_1054	Glutamate synthase [NADPH] large chain.	Short-chain dehydrogenase/reductase SDR.	0.832
EPR74999.1	EPR77495.1	ADILRU_2717	ADILRU_0194	Glutamate synthase [NADPH] large chain.	Short-chain dehydrogenase/reductase SDR.	0.828
EPR74999.1	acpP	ADILRU_2717	ADILRU_1648	Glutamate synthase [NADPH] large chain.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.878
EPR75057.1	EPR76087.1	ADILRU_2594	ADILRU_1604	Chalcone synthase.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	0.722
EPR75057.1	EPR76132.1	ADILRU_2594	ADILRU_1649	Chalcone synthase.	3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.	0.468
EPR75057.1	EPR76569.1	ADILRU_2594	ADILRU_1054	Chalcone synthase.	Short-chain dehydrogenase/reductase SDR.	0.739
EPR75057.1	EPR77495.1	ADILRU_2594	ADILRU_0194	Chalcone synthase.	Short-chain dehydrogenase/reductase SDR.	0.626
EPR75057.1	acpP	ADILRU_2594	ADILRU_1648	Chalcone synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.900
EPR75146.1	EPR74999.1	ADILRU_2496	ADILRU_2717	Putative sulfatase.	Glutamate synthase [NADPH] large chain.	0.413
EPR75146.1	EPR77495.1	ADILRU_2496	ADILRU_0194	Putative sulfatase.	Short-chain dehydrogenase/reductase SDR.	0.621
EPR76087.1	EPR74999.1	ADILRU_1604	ADILRU_2717	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Glutamate synthase [NADPH] large chain.	0.586
EPR76087.1	EPR75057.1	ADILRU_1604	ADILRU_2594	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Chalcone synthase.	0.722
EPR76087.1	EPR76129.1	ADILRU_1604	ADILRU_1646	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Malonyl CoA-acyl carrier protein transacylase.	0.651
EPR76087.1	EPR76132.1	ADILRU_1604	ADILRU_1649	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.	0.798
EPR76087.1	EPR77078.1	ADILRU_1604	ADILRU_0589	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Long-chain-fatty-acid--CoA ligase.	0.901
EPR76087.1	EPR77495.1	ADILRU_1604	ADILRU_0194	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Short-chain dehydrogenase/reductase SDR.	0.715
EPR76087.1	acpP	ADILRU_1604	ADILRU_1648	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.605
EPR76129.1	EPR76087.1	ADILRU_1646	ADILRU_1604	Malonyl CoA-acyl carrier protein transacylase.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.	0.651