Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77501.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
EPR75483.1
Hypothetical protein.
  
     0.591
EPR77333.1
Hypothetical protein.
  
     0.561
EPR77460.1
Proteorhodopsin.
  
     0.542
EPR77502.1
Fic protein family protein.
       0.468
EPR77503.1
Hypothetical protein.
       0.462
EPR75291.1
Chitinase.
  
     0.436
EPR77500.1
Hypothetical protein.
       0.425
EPR77165.1
Hypothetical protein.
  
     0.423
EPR75290.1
Cellulose synthase (UDP-forming).
  
     0.418
EPR76125.1
Uncharacterized protein.
  
     0.407
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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