Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
idiIsopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (174 aa)    
Predicted Functional Partners:
EPR75538.1
Octaprenyl diphosphate synthase; Dimethylallyltransferase; (2E,6E)-farnesyl diphosphate synthase; Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.971
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
     
 0.952
EPR77552.1
Phytoene dehydrogenase.
 
 
 0.932
EPR77553.1
Phytoene synthase.
 
 
 0.930
EPR77549.1
Lycopene elongase.
 
 
 0.929
EPR77178.1
Diphosphomevalonate decarboxylase.
  
 
 0.928
EPR77096.1
Octaprenyl diphosphate synthase; Dimethylallyltransferase; (2E,6E)-farnesyl diphosphate synthase; Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.869
EPR77551.1
C50 carotenoid epsilon cyclase; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
 
   
 0.864
EPR75224.1
(2E,6Z)-farnesyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.844
EPR77550.1
C50 carotenoid epsilon cyclase; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
 
  
 0.837
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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