Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77268.1Hypothetical protein. (277 aa)    
Predicted Functional Partners:
EPR77266.1
Putative secreted protein.
 
     0.943
EPR77267.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.941
EPR77265.1
Lipoprotein.
 
     0.915
EPR76757.1
Hypothetical protein.
  
     0.522
EPR76734.1
Putative transcriptional regulator.
  
     0.490
EPR76885.1
Multi-domain regulatory protein.
  
    0.485
EPR75384.1
Hypothetical protein.
  
     0.481
EPR77333.1
Hypothetical protein.
  
     0.469
EPR75764.1
Rhs element Vgr protein.
  
     0.464
EPR77150.1
Ferric iron ABC transporter, permease protein.
   
 
  0.435
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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