Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77214.1Hypothetical protein. (250 aa)    
Predicted Functional Partners:
EPR77213.1
Formiminoglutamic iminohydrolase.
 
    0.857
EPR77212.1
N-formylglutamate deformylase.
       0.795
EPR77215.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
       0.655
EPR77218.1
Urocanate hydratase.
 
  
 0.611
EPR77210.1
L-proline glycine betaine binding ABC transporter protein ProX; TCDB 3.A.1.12.1.
       0.488
EPR77217.1
Transcriptional regulator, IclR family.
 
     0.471
EPR77219.1
Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization.
 
     0.458
EPR77207.1
L-proline glycine betaine ABC transport system permease protein ProV; TCDB 3.A.1.12.1.
       0.442
EPR77208.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
       0.442
EPR77209.1
Glycine betaine ABC transport system permease protein.
       0.442
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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