STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR77217.1Transcriptional regulator, IclR family. (261 aa)    
Predicted Functional Partners:
EPR77219.1
Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization.
 
     0.925
EPR77216.1
Allantoinase.
 
     0.827
EPR77220.1
N-carbamoyl-L-amino acid hydrolase.
 
     0.807
EPR77218.1
Urocanate hydratase.
 
     0.805
EPR76365.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit.
  
  
  0.516
EPR77221.1
Phenylalanine/histidine ammonia-lyase.
    
  0.503
EPR77214.1
Hypothetical protein.
 
     0.471
EPR75318.1
Transcriptional regulator, IclR family.
  
     0.447
EPR77215.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
       0.421
EPR76809.1
Fe3+/thiamine transport system, secreted component; ABC transporter substrate-binding protein.
  
     0.400
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.