STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EPR77220.1N-carbamoyl-L-amino acid hydrolase. (423 aa)    
Predicted Functional Partners:
EPR77216.1
Allantoinase.
 
 
  0.962
EPR77219.1
Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization.
 
     0.809
EPR77217.1
Transcriptional regulator, IclR family.
 
     0.806
EPR77218.1
Urocanate hydratase.
       0.783
EPR77526.1
Dihydropyrimidinase.
 
 
  0.756
EPR77487.1
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  0.721
EPR76712.1
PLP-dependent aminotransferase NCgl2355 (class III); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.718
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.705
EPR75730.1
Glutamate decarboxylase.
     
  0.697
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
  0.670
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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