Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR77089.1Type I restriction-modification system, DNA-methyltransferase subunit M. (523 aa)    
Predicted Functional Partners:
EPR77086.1
Type I restriction-modification system, specificity subunit S.
 
 0.996
EPR77085.1
Type I restriction-modification system, restriction subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.973
EPR77054.1
Type I restriction-modification system, specificity subunit S.
  
 0.932
EPR75863.1
Type I restriction-modification system, specificity subunit S.
  
 0.923
EPR77088.1
Putative DNA-binding protein in cluster with Type I restriction-modification system; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
  
    0.874
EPR77087.1
Putative DNA-binding protein in cluster with Type I restriction-modification system; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
  
    0.857
atpF
ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
 0.659
EPR77084.1
Hypothetical protein.
       0.582
EPR77055.1
Type I restriction-modification system, restriction subunit R.
  
  
 0.526
EPR75861.1
Type I restriction-modification system, restriction subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.526
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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