EPR77153.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPR77153.1

Manganese ABC transporter, ATP-binding protein SitB. (268 aa)

Predicted Functional Partners:

EPR77152.1

0.999

EPR77154.1

0.997

EPR75123.1

0.992

EPR75121.1

0.948

EPR75854.1

0.859

EPR76878.1

0.826

EPR76898.1

0.816

EPR77367.1

0.812

EPR76899.1

0.803

EPR75644.1

0.803

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR75121.1	EPR75123.1	ADILRU_2658	ADILRU_2660	Zinc ABC transporter, periplasmic-binding protein ZnuA.	Zinc ABC transporter, inner membrane permease protein ZnuB.	0.989
EPR75121.1	EPR75644.1	ADILRU_2658	ADILRU_2187	Zinc ABC transporter, periplasmic-binding protein ZnuA.	ABC transporter, ATP-binding protein.	0.401
EPR75121.1	EPR76898.1	ADILRU_2658	ADILRU_0737	Zinc ABC transporter, periplasmic-binding protein ZnuA.	L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.	0.752
EPR75121.1	EPR77152.1	ADILRU_2658	ADILRU_0532	Zinc ABC transporter, periplasmic-binding protein ZnuA.	Manganese ABC transporter, inner membrane permease protein SitD.	0.946
EPR75121.1	EPR77153.1	ADILRU_2658	ADILRU_0533	Zinc ABC transporter, periplasmic-binding protein ZnuA.	Manganese ABC transporter, ATP-binding protein SitB.	0.948
EPR75121.1	EPR77367.1	ADILRU_2658	ADILRU_0303	Zinc ABC transporter, periplasmic-binding protein ZnuA.	ABC-2:Amidohydrolase.	0.753
EPR75123.1	EPR75121.1	ADILRU_2660	ADILRU_2658	Zinc ABC transporter, inner membrane permease protein ZnuB.	Zinc ABC transporter, periplasmic-binding protein ZnuA.	0.989
EPR75123.1	EPR75644.1	ADILRU_2660	ADILRU_2187	Zinc ABC transporter, inner membrane permease protein ZnuB.	ABC transporter, ATP-binding protein.	0.826
EPR75123.1	EPR75854.1	ADILRU_2660	ADILRU_1814	Zinc ABC transporter, inner membrane permease protein ZnuB.	Transport ATP-binding protein CydCD.	0.852
EPR75123.1	EPR76878.1	ADILRU_2660	ADILRU_0717	Zinc ABC transporter, inner membrane permease protein ZnuB.	Transmembrane protein.	0.850
EPR75123.1	EPR76898.1	ADILRU_2660	ADILRU_0737	Zinc ABC transporter, inner membrane permease protein ZnuB.	L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.	0.855
EPR75123.1	EPR76899.1	ADILRU_2660	ADILRU_0738	Zinc ABC transporter, inner membrane permease protein ZnuB.	L-proline glycine betaine ABC transport system permease protein ProV; TCDB 3.A.1.12.1.	0.763
EPR75123.1	EPR77153.1	ADILRU_2660	ADILRU_0533	Zinc ABC transporter, inner membrane permease protein ZnuB.	Manganese ABC transporter, ATP-binding protein SitB.	0.992
EPR75123.1	EPR77154.1	ADILRU_2660	ADILRU_0534	Zinc ABC transporter, inner membrane permease protein ZnuB.	Manganese ABC transporter, periplasmic-binding protein SitA; Belongs to the bacterial solute-binding protein 9 family.	0.925
EPR75123.1	EPR77367.1	ADILRU_2660	ADILRU_0303	Zinc ABC transporter, inner membrane permease protein ZnuB.	ABC-2:Amidohydrolase.	0.849
EPR75644.1	EPR75121.1	ADILRU_2187	ADILRU_2658	ABC transporter, ATP-binding protein.	Zinc ABC transporter, periplasmic-binding protein ZnuA.	0.401
EPR75644.1	EPR75123.1	ADILRU_2187	ADILRU_2660	ABC transporter, ATP-binding protein.	Zinc ABC transporter, inner membrane permease protein ZnuB.	0.826
EPR75644.1	EPR75854.1	ADILRU_2187	ADILRU_1814	ABC transporter, ATP-binding protein.	Transport ATP-binding protein CydCD.	0.865
EPR75644.1	EPR76878.1	ADILRU_2187	ADILRU_0717	ABC transporter, ATP-binding protein.	Transmembrane protein.	0.803
EPR75644.1	EPR76898.1	ADILRU_2187	ADILRU_0737	ABC transporter, ATP-binding protein.	L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.	0.862