Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77184.1Iron-sulfur cluster assembly protein SufD. (445 aa)    
Predicted Functional Partners:
EPR77185.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 0.998
EPR75652.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 0.993
EPR77186.1
Iron-sulfur cluster assembly protein SufB.
 
  
0.959
EPR77183.1
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
 
 0.952
EPR77188.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.947
EPR77182.1
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
   
 0.892
EPR75655.1
Iron-sulfur cluster assembly protein SufB.
 
  
0.819
EPR77189.1
Iron-sulfur cluster regulator SufR.
  
  
 0.758
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
  0.660
EPR77041.1
Cysteine desulfurase.
  
 
 0.656
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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