Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76768.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
EPR76770.1
Hypothetical protein.
     0.959
EPR76769.1
Drug resistance transporter EmrB/QacA subfamily protein.
 
     0.895
EPR76771.1
Transcriptional regulator, TetR family protein.
 
     0.454
EPR75035.1
Hypothetical protein.
  
     0.448
EPR75918.1
Putative ABC transporter permease.
  
     0.438
EPR76365.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit.
  
  
  0.428
EPR77124.1
Integral membrane protein.
  
     0.415
EPR77486.1
Putative regulatory protein.
  
     0.405
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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