EPR76801.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPR76801.1

COG1399 protein, clustered with ribosomal protein L32p. (190 aa)

Predicted Functional Partners:

rpmF

0.985

rpsC

0.909

rnc

0.886

rplK

0.876

rpsP

0.875

rpsF

0.869

rplM

0.866

rplU

0.861

rpsB

0.855

infC

0.853

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR76801.1	infC	ADILRU_0640	ADILRU_0424	COG1399 protein, clustered with ribosomal protein L32p.	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.853
EPR76801.1	rnc	ADILRU_0640	ADILRU_0642	COG1399 protein, clustered with ribosomal protein L32p.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.886
EPR76801.1	rplK	ADILRU_0640	ADILRU_0309	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L11p (L12e); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.876
EPR76801.1	rplM	ADILRU_0640	ADILRU_1244	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.866
EPR76801.1	rplU	ADILRU_0640	ADILRU_0810	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.861
EPR76801.1	rpmF	ADILRU_0640	ADILRU_0641	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.985
EPR76801.1	rpsB	ADILRU_0640	ADILRU_0680	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family.	0.855
EPR76801.1	rpsC	ADILRU_0640	ADILRU_1222	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.909
EPR76801.1	rpsF	ADILRU_0640	ADILRU_2636	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.869
EPR76801.1	rpsP	ADILRU_0640	ADILRU_0657	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.875
infC	EPR76801.1	ADILRU_0424	ADILRU_0640	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	COG1399 protein, clustered with ribosomal protein L32p.	0.853
infC	rplK	ADILRU_0424	ADILRU_0309	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L11p (L12e); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.947
infC	rplM	ADILRU_0424	ADILRU_1244	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.963
infC	rplU	ADILRU_0424	ADILRU_0810	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.904
infC	rpmF	ADILRU_0424	ADILRU_0641	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.873
infC	rpsB	ADILRU_0424	ADILRU_0680	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family.	0.991
infC	rpsC	ADILRU_0424	ADILRU_1222	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.985
infC	rpsF	ADILRU_0424	ADILRU_2636	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.981
infC	rpsP	ADILRU_0424	ADILRU_0657	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.939
rnc	EPR76801.1	ADILRU_0642	ADILRU_0640	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG1399 protein, clustered with ribosomal protein L32p.	0.886