Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR76830.1Endonuclease; Belongs to the UPF0102 family. (118 aa)    
Predicted Functional Partners:
EPR76831.1
MG(2+) chealatase; ComM-related protein.
 
    0.954
EPR76832.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
    0.899
EPR76828.1
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII.
       0.594
EPR76826.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.572
EPR76487.1
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA.
 
     0.572
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.565
EPR76827.1
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.562
EPR77613.1
Phosphoribosyltransferase domain protein; Protein YhgH required for utilization of DNA as sole source of carbon and energy.
 
    0.546
EPR76829.1
Transporter, LysE family.
       0.518
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.517
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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