STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR76832.1Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake. (428 aa)    
Predicted Functional Partners:
EPR76831.1
MG(2+) chealatase; ComM-related protein.
 
 0.964
EPR76830.1
Endonuclease; Belongs to the UPF0102 family.
 
    0.898
EPR77009.1
Conserved membrane protein, putatively involved in DNA uptake.
 
  
 0.800
EPR77613.1
Phosphoribosyltransferase domain protein; Protein YhgH required for utilization of DNA as sole source of carbon and energy.
 
 
 0.747
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
     0.629
EPR76435.1
Leader peptidase (Prepilin peptidase); N-methyltransferase.
  
  
 0.621
EPR76826.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.573
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.565
EPR76828.1
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII.
       0.552
EPR76827.1
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.520
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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