Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR76896.1Hypothetical protein; Belongs to the glycerate kinase type-1 family. (394 aa)    
Predicted Functional Partners:
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.829
EPR76349.1
3-hydroxyisobutyrate dehydrogenase.
 
 
 0.764
EPR76735.1
D-3-phosphoglycerate dehydrogenase.
    
  0.761
EPR76065.1
2-hydroxy-3-oxopropionate reductase.
  
 
 0.732
EPR76806.1
Putative broad substrate specificity phosphatase; Belongs to the phosphoglycerate mutase family.
     
  0.653
EPR75639.1
Putative broad substrate specificity phosphatase; Belongs to the phosphoglycerate mutase family.
     
  0.653
tadA
tRNA-specific adenosine-34 deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.628
EPR76897.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
       0.493
EPR74981.1
Gluconate permease.
  
  
 0.487
EPR75272.1
PTS system, fructose-specific IIB component; PTS system, fructose-specific IIC component.
 
     0.424
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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