Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76928.1Transcriptional regulator. (207 aa)    
Predicted Functional Partners:
EPR76927.1
Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
       0.811
EPR76929.1
Conserved protein, putative metal-dependent hydrolase.
 
     0.811
EPR76926.1
Ribose 5-phosphate isomerase B; Galactose 6-phosphate isomerase.
       0.690
EPR77457.1
Acetyltransferase, GNAT family.
 
     0.583
EPR76925.1
Membrane alanine aminopeptidase N.
       0.458
EPR77633.1
Hypothetical protein.
  
     0.455
EPR76923.1
Hemoglobin-like protein HbO.
 
     0.431
EPR76372.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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