Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76957.1BOX element protein. (200 aa)    
Predicted Functional Partners:
EPR76878.1
Transmembrane protein.
  
 0.980
EPR76877.1
ATPase component protein.
     
  0.664
EPR76953.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1; Belongs to the ABC transporter superfamily.
    
  0.617
EPR76601.1
Biotin--protein ligase.
 
   
 0.536
EPR76956.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
  
    0.526
EPR76952.1
Transcriptional regulator, TetR family.
       0.514
EPR76954.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
       0.514
EPR76955.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
       0.514
EPR76958.1
Hypothetical protein.
       0.499
EPR76959.1
Hypothetical protein.
       0.499
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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