Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EPR76996.1Transcriptional regulator, TetR family. (216 aa)    
Predicted Functional Partners:
EPR76995.1
Protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
       0.543
EPR76998.1
L-proline glycine betaine ABC transport system permease protein ProW; TCDB 3.A.1.12.1.
       0.503
EPR76999.1
Glycine betaine ABC transport system permease protein.
       0.499
EPR76997.1
L-proline glycine betaine ABC transport system permease protein ProV; TCDB 3.A.1.12.1.
       0.498
EPR76994.1
Hypothetical protein.
       0.464
EPR76410.1
Hypothetical protein.
  
     0.444
EPR76079.1
Protein of unknown function DUF540.
  
     0.425
EPR77000.1
L-proline glycine betaine binding ABC transporter protein ProX; TCDB 3.A.1.12.1.
       0.414
EPR76993.1
Glucoamylase.
 
     0.412
EPR76992.1
Integral membrane protein.
 
     0.408
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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