Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EPR77009.1Conserved membrane protein, putatively involved in DNA uptake. (771 aa)    
Predicted Functional Partners:
EPR77010.1
DNA polymerase III delta subunit.
    
 0.881
EPR77613.1
Phosphoribosyltransferase domain protein; Protein YhgH required for utilization of DNA as sole source of carbon and energy.
 
  
 0.875
EPR77005.1
Putative comE operon protein 1.
 
  
 0.859
EPR76435.1
Leader peptidase (Prepilin peptidase); N-methyltransferase.
  
  
 0.847
EPR76430.1
Type IV fimbrial assembly protein PilC.
   
  
 0.819
EPR76832.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
  
 0.796
EPR76426.1
Type IV fimbrial assembly, ATPase PilB.
  
  
 0.787
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
 
   
 0.755
EPR75416.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
  
 0.708
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.686
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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