Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR77056.1Helix-turn-helix domain protein. (112 aa)    
Predicted Functional Partners:
EPR77057.1
Hypothetical protein.
 
    0.949
EPR77505.1
HipA protein.
 
    0.725
EPR77058.1
Hypothetical protein.
       0.714
EPR75060.1
HipA protein.
 
    0.711
EPR77054.1
Type I restriction-modification system, specificity subunit S.
  
    0.474
EPR77053.1
Type I restriction-modification system, DNA-methyltransferase subunit M.
       0.470
EPR77055.1
Type I restriction-modification system, restriction subunit R.
       0.470
EPR77060.1
DNA-binding response regulator, LuxR family.
   
  0.453
EPR76683.1
Sulfur carrier protein adenylyltransferase ThiF.
   
 
  0.426
EPR75052.1
HipA domain protein.
  
    0.403
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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