Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EPR76548.1Phytoene dehydrogenase. (484 aa)    
Predicted Functional Partners:
EPR76549.1
Lycopene elongase.
 
 
  0.953
EPR77553.1
Phytoene synthase.
 
 
 0.845
EPR77552.1
Phytoene dehydrogenase.
 
 
0.633
EPR77549.1
Lycopene elongase.
 
 
  0.536
EPR75463.1
Lycopene beta cyclase.
 
 
 0.501
EPR76550.1
Putative helicase.
       0.474
EPR77550.1
C50 carotenoid epsilon cyclase; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
 
 
 0.422
EPR77460.1
Proteorhodopsin.
 
   
 0.413
EPR75143.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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