Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76630.1Chitin binding protein. (739 aa)    
Predicted Functional Partners:
EPR75975.1
Hypothetical protein.
   
   0.641
EPR75905.1
arginyl-tRNA synthetase.
   
   0.641
EPR75402.1
Periplasmic protein TonB links inner and outer membranes-like protein.
   
   0.641
EPR75035.1
Hypothetical protein.
   
   0.641
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.555
EPR76631.1
Hypothetical protein.
       0.553
EPR76683.1
Sulfur carrier protein adenylyltransferase ThiF.
  
    0.551
EPR77260.1
Trypsin-like serine protease.
    
 0.473
EPR75786.1
Serine protease.
    
 0.473
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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