Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76410.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
EPR76411.1
Phage-related protein.
       0.626
EPR76412.1
Signal peptidase I.
       0.513
EPR76413.1
Hypothetical protein.
       0.513
EPR76414.1
Hypothetical protein.
       0.513
EPR76823.1
Transcriptional regulator, TetR family.
  
     0.489
EPR76850.1
Large Ala/Glu-rich protein.
  
     0.450
EPR76996.1
Transcriptional regulator, TetR family.
  
     0.444
EPR77336.1
Transcriptional regulator, TetR family.
  
     0.423
EPR76415.1
Hypothetical protein.
       0.404
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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