Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76428.1Twitching motility protein PilT. (302 aa)    
Predicted Functional Partners:
EPR76429.1
Twitching motility protein PilT.
     0.994
EPR76430.1
Type IV fimbrial assembly protein PilC.
 
  
 0.958
EPR76435.1
Leader peptidase (Prepilin peptidase); N-methyltransferase.
 
   
 0.870
EPR76436.1
Type IV pilus biogenesis protein PilM.
 
   
 0.863
EPR76431.1
Hypothetical protein.
 
   
 0.749
EPR76438.1
Type IV pilus biogenesis protein PilO.
 
  
 0.648
EPR76427.1
Hypothetical protein.
       0.572
EPR76426.1
Type IV fimbrial assembly, ATPase PilB.
 
  
0.465
EPR77009.1
Conserved membrane protein, putatively involved in DNA uptake.
     
 0.460
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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