Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPR76330.1Integral membrane protein. (306 aa)    
Predicted Functional Partners:
EPR76331.1
Flp pilus assembly protein, ATPase CpaF.
  
 
 0.975
EPR75818.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
 
 0.974
EPR76328.1
Putative TadE-like family protein.
 
  
 0.903
EPR75816.1
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
  
 
 0.898
EPR75817.1
Flp pilus assembly protein TadB.
  
  
  0.849
EPR76329.1
Putative membrane protein.
 
   
 0.779
EPR76095.1
Hypothetical protein.
  
    0.733
EPR76327.1
Membrane-spanning protein.
 
     0.730
EPR75542.1
Hypothetical protein.
  
     0.704
EPR76893.1
Hypothetical protein.
  
     0.694
Your Current Organism:
Leifsonia rubra
NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R
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