EPR76291.1 protein (Leifsonia rubra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EPR76291.1

Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress; Belongs to the GcvT family. (343 aa)

Predicted Functional Partners:

EPR75567.1

0.930

EPR76583.1

0.894

EPR76290.1

0.831

EPR77183.1

0.711

gpmA

0.687

acpP

0.684

EPR75656.1

0.684

EPR75740.1

0.665

EPR76854.1

0.658

EPR77039.1

0.658

Your Current Organism:

Leifsonia rubra

NCBI taxonomy Id: 1348338
Other names: L. rubra CMS 76R, Leifsonia rubra CMS 76R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR75567.1	EPR75656.1	ADILRU_2110	ADILRU_2199	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Cytochrome oxidase assembly protein.	0.595
EPR75567.1	EPR75740.1	ADILRU_2110	ADILRU_1910	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.807
EPR75567.1	EPR76291.1	ADILRU_2110	ADILRU_1425	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress; Belongs to the GcvT family.	0.930
EPR75567.1	EPR76854.1	ADILRU_2110	ADILRU_0693	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Cysteine desulfurase.	0.873
EPR75567.1	EPR77039.1	ADILRU_2110	ADILRU_0878	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Cysteine desulfurase.	0.873
EPR75567.1	EPR77183.1	ADILRU_2110	ADILRU_0563	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.	0.931
EPR75567.1	acpP	ADILRU_2110	ADILRU_1648	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.720
EPR75656.1	EPR75567.1	ADILRU_2199	ADILRU_2110	Cytochrome oxidase assembly protein.	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	0.595
EPR75656.1	EPR75740.1	ADILRU_2199	ADILRU_1910	Cytochrome oxidase assembly protein.	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.638
EPR75656.1	EPR76291.1	ADILRU_2199	ADILRU_1425	Cytochrome oxidase assembly protein.	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress; Belongs to the GcvT family.	0.684
EPR75656.1	EPR76583.1	ADILRU_2199	ADILRU_1068	Cytochrome oxidase assembly protein.	Hypothetical protein.	0.595
EPR75656.1	EPR76854.1	ADILRU_2199	ADILRU_0693	Cytochrome oxidase assembly protein.	Cysteine desulfurase.	0.642
EPR75656.1	EPR77039.1	ADILRU_2199	ADILRU_0878	Cytochrome oxidase assembly protein.	Cysteine desulfurase.	0.642
EPR75656.1	EPR77183.1	ADILRU_2199	ADILRU_0563	Cytochrome oxidase assembly protein.	Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.	0.742
EPR75656.1	acpP	ADILRU_2199	ADILRU_1648	Cytochrome oxidase assembly protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.684
EPR75740.1	EPR75567.1	ADILRU_1910	ADILRU_2110	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.	0.807
EPR75740.1	EPR75656.1	ADILRU_1910	ADILRU_2199	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Cytochrome oxidase assembly protein.	0.638
EPR75740.1	EPR76291.1	ADILRU_1910	ADILRU_1425	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress; Belongs to the GcvT family.	0.665
EPR75740.1	EPR76583.1	ADILRU_1910	ADILRU_1068	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Hypothetical protein.	0.738
EPR75740.1	EPR76854.1	ADILRU_1910	ADILRU_0693	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Cysteine desulfurase.	0.736